YRC Public Data Repository - Protein Structure Prediction

Protein:	CALSC_ARATH
Organism:	Arabidopsis thaliana
Length:	1780 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CALSC_ARATH.

Description	E-value	Query Range	Subject Range
gi\|13649388 - gi\|13649388\|gb\|AAK37413.1\|AF237733_1 callose synthase 1 catalytic subunit [Arabidopsis thaliana]	2277.0	[0..9]	[1777..167]
gi\|54291339 - gi\|54291339\|dbj\|BAD62105.1\| putative callose synthase 1 catalytic subunit [Oryza sativa Japonica Gro...	2253.0	[0..11]	[1777..184]
gi\|23503034 - gi\|23503034\|gb\|AAK49452.2\|AF304372_1 putative beta-1,3-glucan synthase [Nicotiana alata]	2195.0	[0..9]	[1777..182]
gi\|92896783 - gi\|92896783\|gb\|ABE93351.1\| IMP dehydrogenase/GMP reductase [Medicago truncatula]	2167.0	[0..6]	[1777..171]

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Predicted Domain #1

Region A:
Residues: [1-61]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLRHRTVPP QTGRPLAAEA VGIEEEPYNI IPVNNLLADH PSLRFPEVRA AAAALKTVGD  60
   61 L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [62-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRPPYVQWRS HYDLLDWLAL FFGFQKDNVR NQREHMVLHL ANAQMRLSPP PDNIDS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [118-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDSAVVRRFR RKLLANYSSW CSYLGKKSNI WISDRNPDSR RELLYVGLYL LIWGEAANLR  60
   61 FMPECICYIF HNMASELNKI LEDCLDENTG QPYLPSLSGE NAFLTGVVKP IYDTIQA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [235-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIDESKNGTV AHCKWRNYDD INEYFWTDRC FSKLKWPLDL G

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [276-375]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNFFKSRGKS VGKTGFVERR TFFYLYRSFD RLWVMLALFL QAAIIVAWEE KPDTSSVTRQ  60
   61 LWNALKARDV QVRLLTVFLT WSGMRLLQAV LDAASQYPLV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [376-522]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRETKRHFFR MLMKVIAAAV WIVAFTVLYT NIWKQKRQDR QWSNAATTKI YQFLYAVGAF  60
   61 LVPEILALAL FIIPWMRNFL EETNWKIFFA LTWWFQGKSF VGRGLREGLV DNIKYSTFWI 120
  121 FVLATKFTFS YFLQVKPMIK PSKLLWN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #7

Region A:
Residues: [523-744]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKDVDYEWHQ FYGDSNRFSV ALLWLPVVLI YLMDIQIWYA IYSSIVGAVV GLFDHLGEIR  60
   61 DMGQLRLRFQ FFASAIQFNL MPEEQLLNAR GFGNKFKDGI HRLKLRYGFG RPFKKLESNQ 120
  121 VEANKFALIW NEIILAFREE DIVSDREVEL LELPKNSWDV TVIRWPCFLL CNELLLALSQ 180
  181 ARELIDAPDK WLWHKICKNE YRRCAVVEAY DSIKHLLLSI IK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #8

Region A:
Residues: [745-899]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDTEEHSIIT VFFQIINQSI QSEQFTKTFR VDLLPKIYET LQKLVGLVND EETDSGRVVN  60
   61 VLQSLYEIAT RQFFIEKKTT EQLSNEGLTP RDPASKLLFQ NAIRLPDASN EDFYRQVRRL 120
  121 HTILTSRDSM HSVPVNLEAR RRIAFFSNSL FMNMP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #9

Region A:
Residues: [900-1030]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HAPQVEKMMA FSVLTPYYSE EVVYSKEQLR NETEDGISTL YYLQTIYADE WKNFKERMHR  60
   61 EGIKTDSELW TTKLRDLRLW ASYRGQTLAR TVRGMMYYYR ALKMLAFLDS ASEMDIREGA 120
  121 QELGSVRNLQ G

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #10

Region A:
Residues: [1031-1174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELGGQSDGFV SENDRSSLSR ASSSVSTLYK GHEYGTALMK FTYVVACQIY GSQKAKKEPQ  60
   61 AEEILYLMKQ NEALRIAYVD EVPAGRGETD YYSVLVKYDH QLEKEVEIFR VKLPGPVKLG 120
  121 EGKPENQNHA MIFTRGDAVQ TIDM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #11

Region A:
Residues: [1175-1293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQDSYFEEAL KMRNLLQEYN HYHGIRKPTI LGVREHIFTG SVSSLAWFMS AQETSFVTLG  60
   61 QRVLANPLKV RMHYGHPDVF DRFWFLSRGG ISKASRVINI SEDIFAGFNC TLRGGNVTH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #12

Region A:
Residues: [1294-1481]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HEYIQVGKGR DVGLNQISMF EAKVASGNGE QVLSRDVYRL GHRLDFFRML SFFYTTVGFF  60
   61 FNTMMVILTV YAFLWGRVYL ALSGVEKSAL ADSTDTNAAL GVILNQQFII QLGLFTALPM 120
  121 IVEWSLEEGF LLAIWNFIRM QIQLSAVFYT FSMGTRAHYF GRTILHGGAK YRATGRGFVV 180
  181 EHKGFTEN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #13

Region A:
Residues: [1482-1593]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YRLYARSHFV KAIELGLILI VYASHSPIAK DSLIYIAMTI TSWFLVISWI MAPFVFNPSG  60
   61 FDWLKTVYDF EDFMNWIWYQ GRISTKSEQS WEKWWYEEQD HLRNTGKAGL FV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #14

Region A:
Residues: [1594-1701]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIILVLRFFF FQYGIVYQLK IANGSTSLFV YLFSWIYIFA IFVLFLVIQY ARDKYSAKAH  60
   61 IRYRLVQFLL IVLAILVIVA LLEFTHFSFI DIFTSLLAFI PTGWGILL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #15

Region A:
Residues: [1702-1780]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IAQTQRKWLK NYTIFWNAVV SVARMYDILF GILIMVPVAF LSWMPGFQSM QTRILFNEAF  60
   61 SRGLRIMQIV TGKKSKGDV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits