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View Structure Prediction Details

Protein: gi|25354448, gi|...
Organism: Arabidopsis thaliana
Length: 677 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25354448, gi|....

Description E-value Query
Range
Subject
Range
gi|46518475, gi|... - gi|51970438|dbj|BAD43911.1| unknown protein [Arabidopsis thaliana], gi|46518475|gb|AAS99719.1| At2g2...
1027.0 [0..1] [677..1]

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Predicted Domain #1
Region A:
Residues: [1-677]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVGAPASKP GRIIVQVFLL QLLLLLQSVH SQRSQNKLNI TKPGQNIPAL TVQLRRVGHD  60
   61 TVVVDNGIVQ VTFSNPEGLI TGIKYHGIDN VLDDKIDDRG YWDVVWYEPE KKQKTDKLEG 120
  121 TKFEIITQNE EQIEISFTRT WTISRRGSLV PLNVDKRYII RSGVSGLYMY GILERLEGWP 180
  181 DVDMDQIRIV FKLNPKKFDF MAISDDRQRS MPSMADRENS KSLAYKEAVL LTNPSNPMFK 240
  241 GEVDDKYMYS MEDKDNNVHG WISSDPPVGF WMITPSDEFR LGGPIKQDLT SHAGPITLSM 300
  301 FTSTHYAGKE MRMDYRNGEP WKKVFGPVLA YLNSVSPKDS TLRLWRDAKR QMAAEVKSWP 360
  361 YDFITSEDYP LRHQRGTLEG QFLIKDSYVS RLKIYGKFAF VGLAPIGEAG SWQTESKGYQ 420
  421 FWTKADRRGR FIIENVRAGN YSLYAWGSGF IGDYKYEQNI TITPGSEMNV GPLVYEPPRN 480
  481 GPTLWEIGVP DRTAGEFYIP DPYPTLMNKL YVNPLQDRFR QYGLWDRYAD LYPQNDLVYT 540
  541 IGVSDYRSDW FFAHVARNVG NDTYQPTTWQ IIFNLKNVNR IGRYTLRIAL ASAADSELQI 600
  601 RINDPKSDAI FTTGFIGKDN AIARHGIHGL YRLYSIDVAG NLLSVGDNTI FLTQTRSRTP 660
  661 FQGIMYDYIR LESPFRT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 120.0
Match: 1nkgA
Description: Rhamnogalacturonan lyase from Aspergillus aculeatus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.24087518312023 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle