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View Structure Prediction Details

Protein: GCA2_ARATH
Organism: Arabidopsis thaliana
Length: 278 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GCA2_ARATH.

Description E-value Query
Range
Subject
Range
gi|13507025 - gi|13507025|gb|AAK28403.1|AF249876_1 transcription factor APFI [Arabidopsis thaliana]
255.0 [0..1] [278..1]

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Predicted Domain #1
Region A:
Residues: [1-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTLGRAIYT VGNWIRGTGQ ALDRVGSLLQ GSHRIEEHLS RHRTLMNVFD KSPLVDKDVF  60
   61 VAPSASVIGD VQIGKGSSIW YGCVLRGDVN NISVGSGTNI QDNTLVHVAK TNISGKVLPT 120
  121 LIGDNVTVGH SAVIHGCTVE DDAFVGMGAT LLDGVVVEKH AMVAAGSLVK QNTRIPSGEV 180
  181 WGGNPAKFMR KLTDEEIVYI SQSAKNYINL AQIHASENSK SFEQIEVERA LRKKYARKDE 240
  241 DYDSMLGITR ETPPELILPD NVLPGGKPVA KVPSTQYF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.0
Match: 1xhdA
Description: X-ray crystal structure of putative acetyltransferase, product of BC4754 gene [Bacillus cereus]
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.59855937987599 bayes_pls_golite062009
transferase activity 1.3237300007392 bayes_pls_golite062009
transferase activity, transferring acyl groups 0.886009567107207 bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups 0.876088267537604 bayes_pls_golite062009
acyltransferase activity 0.870444687691191 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle