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View Structure Prediction Details

Protein: COAD_ARATH
Organism: Arabidopsis thaliana
Length: 176 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COAD_ARATH.

Description E-value Query
Range
Subject
Range
gi|92392868, gi|... - gi|93005190|ref|YP_579627.1| coenzyme A biosynthesis protein [Psychrobacter cryohalolentis K5], gi|9...
134.0 [0..7] [174..3]

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Predicted Domain #1
Region A:
Residues: [1-176]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPEDSKMS PANSFGAVVL GGTFDRLHDG HRMFLKAAAE LARDRIVVGV CDGPMLTKKQ  60
   61 FSDMIQPIEE RMRNVETYVK SIKPELVVQA EPITDPYGPS IVDENLEAIV VSKETLPGGL 120
  121 SVNRKRAERG LSQLKIEVVE IVSDGSSGNK ISSSTLRKME AEKASKQKQP AEEKAS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.09691
Match: 1b6tA
Description: Phosphopantetheine adenylyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.84668360172717 bayes_pls_golite062009
ligase activity 0.41353894226697 bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds 0.1911539125531 bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds 0.1911539125531 bayes_pls_golite062009
aminoacyl-tRNA ligase activity 0.178548924377401 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle