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View Structure Prediction Details

Protein: AMPD_ARATH
Organism: Arabidopsis thaliana
Length: 839 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AMPD_ARATH.

Description E-value Query
Range
Subject
Range
gi|92870295 - gi|92870295|gb|ABE79614.1| Adenosine/AMP deaminase active site [Medicago truncatula]
650.0 [0..1] [837..1]
gi|73536071 - gi|73536071|pdb|2A3L|A Chain A, X-Ray Structure Of Adenosine 5'-Monophosphate Deaminase From Arabido...
640.0 [0..139] [839..1]
gi|109013244 - gi|109013244|ref|XP_001093312.1| PREDICTED: adenosine monophosphate deaminase 2 (isoform L) isoform ...
633.0 [0..27] [839..27]
AMPD2 - adenosine monophosphate deaminase 2 (isoform L)
633.0 [0..27] [839..27]
AMPD2_RAT - AMP deaminase 2 OS=Rattus norvegicus GN=Ampd2 PE=1 SV=2
630.0 [0..60] [839..5]
gi|73959321 - gi|73959321|ref|XP_852599.1| PREDICTED: similar to adenosine monophosphate deaminase 2 (isoform L) i...
629.0 [0..83] [839..2]
AMPD2_MOUSE - AMP deaminase 2 OS=Mus musculus GN=Ampd2 PE=1 SV=1
628.0 [0..83] [839..2]

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Predicted Domain #1
Region A:
Residues: [1-143]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPNIYQLAL AALFGASFVA VSGFFMHFKA LNLVLERGKE RKENPDGDEP QNPTLVRRRS  60
   61 QVRRKVNDQY GRSPASLPDA TPFTDGGGGG GGDTGRSNGH VYVDEIPPGL PRLHTPSEGR 120
  121 ASVHGASSIR KTGSFVRPIS PKS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.39794
Match: 1y0fB
Description: No description for 1y0fB was found.

Predicted Domain #2
Region A:
Residues: [144-839]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVASASAFES VEESDDDDNL TNSEGLDASY LQANGDNEMP ADANEEQISM AASSMIRSHS  60
   61 VSGDLHGVQP DPIAADILRK EPEQETFVRL NVPLEVPTSD EVEAYKCLQE CLELRKRYVF 120
  121 QETVAPWEKE VISDPSTPKP NTEPFAHYPQ GKSDHCFEMQ DGVVHVFANK DAKEDLFPVA 180
  181 DATAFFTDLH HVLKVIAAGN IRTLCHRRLV LLEQKFNLHL MLNADKEFLA QKSAPHRDFY 240
  241 NVRKVDTHVH HSACMNQKHL LRFIKSKLRK EPDEVVIFRD GTYLTLREVF ESLDLTGYDL 300
  301 NVDLLDVHAD KSTFHRFDKF NLKYNPCGQS RLREIFLKQD NLIQGRFLGE ITKQVFSDLE 360
  361 ASKYQMAEYR ISIYGRKMSE WDQLASWIVN NDLYSENVVW LIQLPRLYNI YKDMGIVTSF 420
  421 QNILDNIFIP LFEATVDPDS HPQLHVFLKQ VVGFDLVDDE SKPERRPTKH MPTPAQWTNA 480
  481 FNPAFSYYVY YCYANLYVLN KLRESKGMTT ITLRPHSGEA GDIDHLAATF LTCHSIAHGI 540
  541 NLRKSPVLQY LYYLAQIGLA MSPLSNNSLF LDYHRNPFPV FFLRGLNVSL STDDPLQIHL 600
  601 TKEPLVEEYS IAASVWKLSA CDLCEIARNS VYQSGFSHAL KSHWIGKDYY KRGPDGNDIH 660
  661 KTNVPHIRVE FRDTIWKEEM QQVYLGKAVI SDEVVP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2a3lA
Description: X-Ray Structure of Adenosine 5'-Monophosphate Deaminase from Arabidopsis Thaliana in Complex with Coformycin 5'-Phosphate
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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