YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: NAC86_ARATH
Organism: Arabidopsis thaliana
Length: 476 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NAC86_ARATH.

Description E-value Query
Range
Subject
Range
gi|6714418, gi|1... - gi|6714418|gb|AAF26106.1|AC012328_9 NAM-like protein (no apical meristem) [Arabidopsis thaliana], gi...
408.0 [0..1] [476..1]
gi|21105746 - gi|21105746|gb|AAM34772.1|AF509872_1 nam-like protein 9 [Petunia x hybrida]
337.0 [0..6] [466..10]
gi|255674164, gi... - gi|34902214|ref|NP_912453.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)], gi|27452...
322.0 [0..1] [427..1]

Back

Predicted Domain #1
Region A:
Residues: [1-167]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPVSLPPGF RFHPTDEELI TYYLKRKING QEIELEIIPE VDLYKCEPWD LPGKSLIPSK  60
   61 DQEWFFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH 120
  121 GIRTGWVMHE YRLDESECEP SAFGMQDAYA LCRVFKKIVI EAKPRDQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.0
Match: 1ut4A
Description: Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [168-275]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HQQQHQPYVH TSSNISGSSS FDVCSDLEIS SNTPYNTAAH IQPRFGNANA ISDHDDWSQY  60
   61 LSQNMPTSFS DYGSPYGPYL TQSKVNTEVQ CEMFQHQMSL PPLRVENS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [276-360]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QAQTSDFSKR LHQNSGQSGF DDFTFAASNS NQFYNSNVDD HLIHIGNLDE QSYIEEQELI  60
   61 LPSFQSNDQD LELYGGSRTN TIDNI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [361-476]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIDDFFSFEN QAQDNDNSNV TPNSAGFEMI GEEIIVNHKM LISTRQTTEI LYYQVVPSQI  60
   61 LKIHINPVHG NEERTMLMEE DSDDSWFQKA ENVAKMKLKQ ISLVAKRYYK CLTIIF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.813 d.201.1 SRP19


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle