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View Structure Prediction Details

Protein: gi|7671508, gi|1...
Organism: Arabidopsis thaliana
Length: 350 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7671508, gi|1....

Description E-value Query
Range
Subject
Range
gi|77954715, gi|... - gi|77954715|ref|ZP_00819103.1| RNA methyltransferase TrmH, group 3 [Marinobacter aquaeolei VT8], gi|...
242.0 [0..52] [303..3]

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Predicted Domain #1
Region A:
Residues: [1-350]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSCKSLIRA SISSFPFVPL PNPNFSITFI SVRAFSPLSV LHPNSSCIVT ARRTFHGAVA  60
   61 LSPESLTEES PKDTVKGLLT TNRGEASSLM KMERRCSLSN GEGDCRGSWF PYEDRFRCGE 120
  121 VHLSSREVLE AVSPHMMEER TDRFRRVVEN RSYSVCLVVE GLSDFGNISA AFRSADALGI 180
  181 QSVHVVSCDS SKRYNGNRHV SMGAEKWLDI EFWDTPKECF KVLKSRGYRI ATTHLGMDTV 240
  241 SIYDMDWSCP TAIVVGNEGR GISDEALELS DLRCSIPMNG MVDSFNVSVA AGILMHHAVS 300
  301 DRTTRLGSHG DLSEAEKEIL MAEFSLRHSR SSICIAYEFA KRKQQHSTSS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.30103
Match: 1gz0A
Description: RlmB, C-terminal domain; RlmB, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transferase activity 0.0614372540300698 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle