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View Structure Prediction Details

Protein: gi|42563535, gi|...
Organism: Arabidopsis thaliana
Length: 422 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42563535, gi|....

Description E-value Query
Range
Subject
Range
gi|42573479, gi|... - gi|42573479|ref|NP_974836.1| unknown protein [Arabidopsis thaliana], gi|30690265|ref|NP_850871.1| un...
517.0 [0..1] [419..1]

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Predicted Domain #1
Region A:
Residues: [1-94]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLLPIYLI ILAFLCTVGA IALALFHIYK HLLNYTEPIY QRYIVRIVFM VPVYALMSFL  60
   61 ALVLPKSSIY FNSIREVYEA WVIYNFLSLC LAWV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [95-267]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGPGSVVISL TGRSLKPSWH LMTCCIPPLP LDGRFIRRCK QGCLQFVILK PILVAVTLVL  60
   61 YAKGKYKDGN FSPDQSYLYL TIIYTISYTV ALYALVLFYV ACKDLLQPFN PVPKFVIIKS 120
  121 VVFLTYWQGV LVFLFAKSGF IRDEEEAALF QNFIICVEML IAAAAHFYAF PYK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [268-422]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EYAEANVGGA RSFSGSLAHA LMLNDFYHDT VHQFAPTYHD YVLYNHNDGG EEGTRKYRAR  60
   61 TFVPTGQEMD AVRKNKHMFG NKIDGVSVSS QSSETSTPKT SGVTYDPARP ESMKSSLLVD 120
  121 ASDSVSTMYD MSLIDIDISS YPSKVPSANI SGGPK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle