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View Structure Prediction Details

Protein: GPAT2_ARATH
Organism: Arabidopsis thaliana
Length: 530 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GPAT2_ARATH.

Description E-value Query
Range
Subject
Range
GPAT3_ARATH - Probable glycerol-3-phosphate acyltransferase 3 OS=Arabidopsis thaliana GN=GPAT3 PE=2 SV=1
335.0 [0..5] [529..4]

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Predicted Domain #1
Region A:
Residues: [1-243]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGNKISTLQ ALVFFLYRFF ILRRWCHRSP KQKYQKCPSH GLHQYQDLSN HTLIFNVEGA  60
   61 LLKSNSLFPY FMVVAFEAGG VIRSLFLLVL YPFISLMSYE MGLKTMVMLS FFGVKKESFR 120
  121 VGKSVLPKYF LEDVGLEMFQ VLKRGGKRVA VSDLPQVMID VFLRDYLEIE VVVGRDMKMV 180
  181 GGYYLGIVED KKNLEIAFDK VVQEERLGSG RRLIGITSFN SPSHRSLFSQ FCQEIYFVRN 240
  241 SDK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.69897
Match: 1f5sA
Description: Phosphoserine phosphatase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.02290994020378 bayes_pls_golite062009
hydrolase activity 0.71914501009647 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [244-530]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSWQTLPQDQ YPKPLIFHDG RLAVKPTPLN TLVLFMWAPF AAVLAAARLV FGLNLPYSLA  60
   61 NPFLAFSGIH LTLTVNNHND LISADRKRGC LFVCNHRTLL DPLYISYALR KKNMKAVTYS 120
  121 LSRLSELLAP IKTVRLTRDR VKDGQAMEKL LSQGDLVVCP EGTTCREPYL LRFSPLFSEV 180
  181 CDVIVPVAID SHVTFFYGTT ASGLKAFDPI FFLLNPFPSY TVKLLDPVSG SSSSTCRGVP 240
  241 DNGKVNFEVA NHVQHEIGNA LGFECTNLTR RDKYLILAGN NGVVKKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.09691
Match: 1k30A
Description: Glycerol-3-phosphate (1)-acyltransferase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle