YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: HDA7_ARATH
Organism: Arabidopsis thaliana
Length: 409 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HDA7_ARATH.

Description E-value Query
Range
Subject
Range
gi|114555329 - gi|114555329|ref|XP_519834.2| PREDICTED: similar to histone deacetylase HD1 isoform 6 [Pan troglodyt...
469.0 [0..6] [409..5]

Back

Predicted Domain #1
Region A:
Residues: [1-409]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLADGGKR RVSYFYEPMI GDYYYGVNQP TKPQRIRVTH NLILSYNLHR HMEINHPDLA  60
   61 DASDFEKFHS LEYINFLKSV TPETVTDPHP SVSENLKRFN VDVDWDGPVF HNLFDYCRAY 120
  121 AGGSISAAAK LNRQEADIAI NWAGGMHHVK KDKASGFGYV NDVVLAILEL LKSFKRVLYI 180
  181 EIGFPHGDEV EEAFKDTDRV MTVSFHKVGD TGDISDYGEG KGQYYSLNAP LKDGLDDFSL 240
  241 RGLFIPVIHR AMEIYEPEVI VLQCGADSLA GDPFGTFNLS IKGHGDCLQY VRSFNVPLMI 300
  301 LGGGGYTLPN VARCWCYETA IAVGEQLDND LPGNDYMKYF RPDYKLHILP TNRQNLNTRL 360
  361 DIITMRETLL AQLSLVMHAP SVPFQDTPSS SQATEAAEVD MEKRNDPRI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 85.30103
Match: 2v5xA
Description: No description for 2v5xA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle