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View Structure Prediction Details

Protein: Y1649_ARATH
Organism: Arabidopsis thaliana
Length: 804 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for Y1649_ARATH.

Predicted Domain #1
Region A:
Residues: [1-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKRIVFFA CLLLFTVLLR FSYAGITTES PLSVEQTLSS SNGIYELGFF SPNNSQNLYV  60
   61 GIWFKGIIPR VVVWVANRET PTTDTSANLA ISSNGSLLLF NGKHGVVWSI GENFASNGSR 120
  121 AELTDNGNLV VIDNASGRTL WESFEHFGDT MLPFSSLMYN LATGEKRVLT SWKTDTDPSP 180
  181 GVFVGQITPQ 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.522879
Match: 2d04A
Description: No description for 2d04A was found.

Predicted Domain #2
Region A:
Residues: [191-462]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPSQVLIMRG STRYYRTGPW AKTRFTGIPL MDDTYASPFS LQQDANGSGF FTYFDRSFKL  60
   61 SRIIISSEGS MKRFRHNGTD WELSYMAPAN SCDIYGVCGP FGLCIVSVPL KCKCLKGFVP 120
  121 HSTEEWKRGN WTGGCARLTE LHCQGNSTGK DVNIFHPVTN VKLPDFYEYE SSVDAEECHQ 180
  181 SCLHNCSCLA FAYIHGIGCL IWNQNLMDAV QFSAGGEILS IRLAHSELGG NKRNKIIVAS 240
  241 TVSLSLFVIL TSAAFGFWRY RVKHKAYTLK DA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.39794
Match: 1m6bA
Description: Receptor protein-tyrosine kinase Erbb-3 extracellular domain; Receptor protein-tyrosine kinase Erbb-3 Cys-rich domains
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [463-804]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WRNDLKSKEV PGLEFFEMNT IQTATNNFSL SNKLGQGGFG SVYKGKLQDG KEIAVKQLSS  60
   61 SSGQGKEEFM NEIVLISKLQ HRNLVRVLGC CIEGEEKLLI YEFMLNKSLD TFVFDARKKL 120
  121 EVDWPKRFDI VQGIARGLLY LHRDSRLKVI HRDLKVSNIL LDEKMNPKIS DFGLARMYEG 180
  181 TQCQDKTRRV VGTLGYMSPE YAWTGVFSEK SDIYSFGVLL LEIIIGEKIS RFSYGEEGKT 240
  241 LLAYAWESWG ETKGIDLLDQ DLADSCRPLE VGRCVQIGLL CVQHQPADRP NTLELLAMLT 300
  301 TTSDLPSPKQ PTFVVHSRDD ESSLSKDLFT VNEMTQSMIL GR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.522879
Match: 2qkwB
Description: No description for 2qkwB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle