YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: XTH33_ARATH
Organism: Arabidopsis thaliana
Length: 310 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XTH33_ARATH.

Description E-value Query
Range
Subject
Range
gi|68532877 - gi|68532877|dbj|BAE06063.1| xyloglucan endotransglucosylase/hydrolase [Sagittaria pygmaea]
252.0 [0..4] [310..13]

Back

Predicted Domain #1
Region A:
Residues: [1-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIMWETAVV FCLCSLSLVS SHSRKFTTPN VTRLTDQFSK IAIENGFSRR FGAHNIQVNG  60
   61 SLAKLTLDKS SGAGLVSKNK YHYGFFSARL KLPAGFASGV VVAFYLSNAE TYPKSHDEID 120
  121 IELLGRSRRD DWTIQTNVYA NGSTRTGREE KFYFWFDPTQ AFHDYTLIWN SHHTVFLVDN 180
  181 IPVRQFPNRG AFTSAYPSKP MSLYVTVWDG SEWATKGGKY PVNYKYAPFV VSVADVELSG 240
  241 CSVNNGSSTG SGPCTKSGGS ISSLDPVDGQ DFATLSKNQI NAMDWARRKL MFYSYCSDKP 300
  301 RYKVMPAECN 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.0
Match: 1umzA
Description: Xyloglucan endotransglycosylase in complex with the xyloglucan nonasaccharide XLLG.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle