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View Structure Prediction Details

Protein: XTH28_ARATH
Organism: Arabidopsis thaliana
Length: 332 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XTH28_ARATH.

Description E-value Query
Range
Subject
Range
gi|21553969 - gi|21553969|gb|AAM63050.1| putative xyloglucan-specific glucanase [Arabidopsis thaliana]
339.0 [0..1] [332..1]

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Predicted Domain #1
Region A:
Residues: [1-332]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFITRFLVF MSLFTSLVSG FALQKLPLIQ FDEGYTQLFG DQNLIVHRDG KSVRLTLDER  60
   61 TGSGFVSNDI YLHGFFSSSI KLPADYSAGV VIAFYLSNGD LYEKNHDEID FEFLGNIRGR 120
  121 EWRIQTNIYG NGSTHLGREE RYNLWFDPTE DFHQYSILWS LSHIIFYVDN VPIREVKRTA 180
  181 SMGGDFPAKP MSLYSTIWDG SKWATDGGKY GVNYKYAPYV SQFTDLILHG CAVDPTEKFP 240
  241 SCKDEAVQNL RLASEITESQ RNKMEIFRQK HMTYSYCYDH MRYKVVLSEC VVNPAEAKRL 300
  301 RVYDPVTFGG IPHGHRRGKH RSRSRLARTE SI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 86.39794
Match: 1umzA
Description: Xyloglucan endotransglycosylase in complex with the xyloglucan nonasaccharide XLLG.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle