YRC Public Data Repository - Protein Structure Prediction

Protein:	XTH15_ARATH
Organism:	Arabidopsis thaliana
Length:	289 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XTH15_ARATH.

Description	E-value	Query Range	Subject Range
gi\|7447401, gi\|1... - pir\|\|F71402 xyloglucan endo-1,4-beta-D-glucanase (EC 3.2.1.-) XTR-7 - Arabidopsis thaliana, gi\|7268...	292.0	[0..1]	[289..1]
gi\|29500899, gi\|... - gi\|29500899\|emb\|CAD87533.1\| putative xyloglucan endotransglycosylase [Cucumis sativus], gi\|29500891\|...	288.0	[0..1]	[287..1]
gi\|115334954 - gi\|115334954\|gb\|ABI94063.1\| xyloglucan endotransglucosylase/hydrolase 3 [Cucumis melo]	283.0	[0..1]	[287..1]
gi\|8886867 - gi\|8886867\|gb\|AAF80591.1\|AF223420_1 xyloglucan endotransglycosylase XET2 [Asparagus officinalis]	282.0	[0..9]	[285..3]
XTHB_PHAAN - Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=...	281.0	[0..1]	[288..1]
gi\|42795462 - gi\|42795462\|gb\|AAS46241.1\| xyloglucan endotransglucosylase-hydrolase XTH3 [Lycopersicon esculentum]	281.0	[0..1]	[287..1]
gi\|950299 - gi\|950299\|gb\|AAC09388.1\| xyloglucan endotransglycosylase precursor [Actinidia deliciosa]	280.0	[0..1]	[288..1]

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Predicted Domain #1

Region A:
Residues: [1-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPSSSLTTI VATVLLVTLF GSAYASNFFD EFDLTWGDHR GKIFNGGNML SLSLDQVSGS  60
   61 GFKSKKEYLF GRIDMQLKLV AGNSAGTVTA YYLSSQGATH DEIDFEFLGN ETGKPYVLHT 120
  121 NVFAQGKGDR EQQFYLWFDP TKNFHTYSIV WRPQHIIFLV DNLPIRVFNN AEKLGVPFPK 180
  181 SQPMRIYSSL WNADDWATRG GLVKTDWSKA PFTAYYRGFN AAACTASSGC DPKFKSSFGD 240
  241 GKLQVATELN AYGRRRLRWV QKYFMIYNYC SDLKRFPRGF PPECKKSRV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.69897
Match:	1umzA
Description:	Xyloglucan endotransglycosylase in complex with the xyloglucan nonasaccharide XLLG.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits