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View Structure Prediction Details

Protein: XTH12_ARATH
Organism: Arabidopsis thaliana
Length: 285 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XTH12_ARATH.

Description E-value Query
Range
Subject
Range
gi|29500899, gi|... - gi|29500899|emb|CAD87533.1| putative xyloglucan endotransglycosylase [Cucumis sativus], gi|29500891|...
344.0 [0..4] [284..1]

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Predicted Domain #1
Region A:
Residues: [1-285]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAFATKQSP LLLASLLILI GVATGSFYDS FDITWGAGRA NIFESGQLLT CTLDKTSGSG  60
   61 FQSKKEYLFG KIDMKIKLVP GNSAGTVTAY YLSSKGETWD EIDFEFLGNV TGQPYVIHTN 120
  121 VFTGGKGNRE MQFYLWFDPT ADFHTYTVLW NPLNIIFLVD GIPIRVFKNN EANGVAYPKS 180
  181 QPMKIYSSLW EADDWATQGG KVKTDWTNAP FSASYRSFND VDCCSRTSIW NWVTCNANSN 240
  241 SWMWTTLNSN QLGQLKWVQK DYMIYNYCTD FKRFPQGLPT ECNLN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 87.69897
Match: 1umzA
Description: Xyloglucan endotransglycosylase in complex with the xyloglucan nonasaccharide XLLG.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle