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View Structure Prediction Details

Protein: VA712_ARATH
Organism: Arabidopsis thaliana
Length: 219 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VA712_ARATH.

Description E-value Query
Range
Subject
Range
gi|215686799, gi... - gi|78707797|gb|ABB46772.1| Synaptobrevin, putative [Oryza sativa (japonica cultivar-group)], gi|2226...
238.0 [0..1] [218..1]

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Predicted Domain #1
Region A:
Residues: [1-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSILYALVAR GTVVLAELST TSTNASTIAK QILEKIPGNG DSHVSYSQDR YVFHVKRTDG  60
   61 LTVLCMADED AGRRIPFSFL EDIHQRFVRT YGRAIHSAQA YAMNDEFSRV LNQQIEYYSN 120
  121 DPNADTISRI KGEMNQVRDV MIENIDNILD RGERLELLVD KTANMQGNTF RFRKQTRRFN 180
  181 NTVWWRNCKL TLLLILVLLV IIYIGVAFAC HGPTLPSCV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.69897
Match: 2nupC
Description: No description for 2nupC was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle