YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SYGM1_ARATH
Organism: Arabidopsis thaliana
Length: 729 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYGM1_ARATH.

Description E-value Query
Range
Subject
Range
gi|109473554 - gi|109473554|ref|XP_001061006.1| PREDICTED: similar to glycyl-tRNA synthetase [Rattus norvegicus]
574.0 [0..28] [729..123]

Back

Predicted Domain #1
Region A:
Residues: [1-729]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIFSTFVFH RRQQIFNLRQ FQTTTILRNP ISIAPIQIPM DATEQSLRQS LSEKSSSVEA  60
   61 QGNAVRALKA SRAAKPEIDA AIEQLNKLKL EKSTVEKELQ SIISSSGNGS LNREAFRKAV 120
  121 VNTLERRLFY IPSFKIYSGV AGLFDYGPPG CAIKSNVLSF WRQHFILEEN MLEVDCPCVT 180
  181 PEVVLKASGH VDKFTDLMVK DEKTGTCYRA DHLLKDYCTE KLEKDLTISA EKAAELKDVL 240
  241 AVMEDFSPEQ LGAKIREYGI TAPDTKNPLS DPYPFNLMFQ TSIGPSGLIP GYMRPETAQG 300
  301 IFVNFKDLYY YNGKKLPFAA AQIGQAFRNE ISPRQGLLRV REFTLAEIEH FVDPENKSHP 360
  361 KFSDVAKLEF LMFPREEQMS GQSAKKLCLG EAVAKGTVNN ETLGYFIGRV YLFLTRLGID 420
  421 KERLRFRQHL ANEMAHYAAD CWDAEIESSY GWIECVGIAD RSAYDLRAHS DKSGTPLVAE 480
  481 EKFAEPKEVE KLVITPVKKE LGLAFKGNQK NVVESLEAMN EEEAMEMKAT LESKGEVEFY 540
  541 VCTLKKSVNI KKNMVSISKE KKKEHQRVFT PSVIEPSFGI GRIIYCLYEH CFSTRPSKAG 600
  601 DEQLNLFRFP PLVAPIKCTV FPLVQNQQFE EVAKVISKEL ASVGISHKID ITGTSIGKRY 660
  661 ARTDELGVPF AITVDSDTSV TIRERDSKDQ VRVTLKEAAS VVSSVSEGKM TWQDVWATFP 720
  721 HHSSAAADE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 155.0
Match: 2q5hA
Description: No description for 2q5hA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle