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View Structure Prediction Details

Protein: SYP31_ARATH
Organism: Arabidopsis thaliana
Length: 336 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYP31_ARATH.

Description E-value Query
Range
Subject
Range
gi|109099266 - gi|109099266|ref|XP_001111568.1| PREDICTED: similar to syntaxin 2 isoform 2 [Macaca mulatta]
176.0 [0..89] [335..131]

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Predicted Domain #1
Region A:
Residues: [1-336]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSTFRDRTV ELHSLSQTLK KIGAIPSVHQ DEDDPASSKR SSPGSEFNKK ASRIGLGIKE  60
   61 TSQKITRLAK LAKQSTIFND RTVEIQELTV LIRNDITGLN MALSDLQTLQ NMELADGNYS 120
  121 QDQVGHYTAV CDDLKTRLMG ATKQLQDVLT TRSENMKAHE NRKQLFSTKN AVDSPPQNNA 180
  181 KSVPEPPPWS SSSNPFGNLQ QPLLPPLNTG APPGSQLRRR SAIENAPSQQ MEMSLLQQTV 240
  241 PKQENYSQSR AVALHSVESR ITELSGIFPQ LATMVTQQGE LAIRIDDNMD ESLVNVEGAR 300
  301 SALLQHLTRI SSNRWLMMKI FAVIILFLIV FLFFVA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.69897
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle