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View Structure Prediction Details

Protein: SRR1_ARATH
Organism: Arabidopsis thaliana
Length: 275 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRR1_ARATH.

Description E-value Query
Range
Subject
Range
gi|67005933 - gi|67005933|gb|AAY62603.1| sensitivity to red light reduced protein 1 [Arabidopsis thaliana]
332.0 [0..1] [275..1]

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Predicted Domain #1
Region A:
Residues: [1-84]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METTVKNSSS DGEWKVVLPS KGRQGRRRKP KPKGQAEEEE QPWKSDDLEI DPQRQARLKQ  60
   61 KMEISLKKIE SSSFYTAFLE QLKS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [85-167]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEVSNQIRLV LGSETQLQMV MYGIGSIESY ESPRFQLSIA ILMKREFDWV GDNIEVFDPV  60
   61 LSATESSYLE SLGCSVLSVN EQA

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 25.327902
Match: PF07985.3
Description: No description for PF07985.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [168-275]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RREALKPTLF FMPHCEANLY SNLLQANWRM DRLSKIALFG NSFQMYEEQV SFDAEVICAT  60
   61 KRIIAAQRVT SEFAIETESD DYFAAFHDSS WHFFSSGIDS ELPLFVSD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle