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View Structure Prediction Details

Protein: RECAC_ARATH
Organism: Arabidopsis thaliana
Length: 439 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RECAC_ARATH.

Description E-value Query
Range
Subject
Range
gi|166841, gi|421845 - pir||A46259 recombination protein recA homolog - Arabidopsis thaliana (fragment), gi|166841|gb|AAA...
391.0 [0..2] [439..1]

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Predicted Domain #1
Region A:
Residues: [1-75]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSQLVLSLK LNPSFTPLSP LFPFTPCSSF SPSLRFSSCY SRRLYSPVTV YAAKKLSHKI  60
   61 SSEFDDRING ALSPD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.09691
Match: 1b22A
Description: DNA repair protein Rad51, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [76-439]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADSRFLDRQK ALEAAMNDIN SSFGKGSVTR LGSAGGALVE TFSSGILTLD LALGGGLPKG  60
   61 RVVEIYGPES SGKTTLALHA IAEVQKLGGN AMLVDAEHAF DPAYSKALGV DVENLIVCQP 120
  121 DNGEMALETA DRMCRSGAVD LICVDSVSAL TPRAEIEGEI GMQQMGLQAR LMSQALRKMS 180
  181 GNASKAGCTL IFLNQIRYKI GVYYGNPEVT SGGIALKFFA SVRLEIRSAG KIKSSKGDED 240
  241 IGLRARVRVQ KSKVSRPYKQ AEFEIMFGEG VSKLGCVLDC AEIMEVVVKK GSWYSYEDQR 300
  301 LGQGREKALQ HLRENPALQD EIEKKVRLLM LDGEVHRSTP LMSSSSSSAS HREEEEEDSL 360
  361 DDFQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 105.0
Match: 1ubcA
Description: RecA protein, ATPase-domain; RecA protein, C-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle