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View Structure Prediction Details

Protein: R13A1_ARATH
Organism: Arabidopsis thaliana
Length: 206 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for R13A1_ARATH.

Description E-value Query
Range
Subject
Range
gi|115389400, gi... - gi|115389400|ref|XP_001212205.1| serine palmitoyltransferase 2 [Aspergillus terreus NIH2624], gi|114...
275.0 [0..5] [206..692]

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Predicted Domain #1
Region A:
Residues: [1-206]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSGSGICAK RVVVDARHHM LGRLASVVAK DLLNGQNIVV VRCEEICLSG GLVRQKMKYM  60
   61 RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG ANALARLKVF EGVPTPYDKI 120
  121 KRMVVPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LENKRKERAQ AVYERKKQLS 180
  181 KLRAKAEKVA EEKLGSQLDV LAPVKY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.0
Match: 1s1iM
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle