YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PSK3_ARATH
Organism: Arabidopsis thaliana
Length: 79 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSK3_ARATH.

Description E-value Query
Range
Subject
Range
gi|17026113, gi|... - gi|21593585|gb|AAM65552.1| probable phytosulfokines 3 precursor [Contains: Phytosulfokine-alpha (PSK...
122.0 [0..1] [79..1]

Back

Predicted Domain #1
Region A:
Residues: [1-79]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKFTTIFIM ALLLCSTLTY AARLTPTTTT ALSRENSVKE IEGDKVEEES CNGIGEEECL  60
   61 IRRSLVLHTD YIYTQNHKP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 32.769551
Match: PF06404.3
Description: No description for PF06404.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.535 N/A N/A a.30.1 ROP protein
View Download 0.359 N/A N/A d.192.1 YlxR-like
View Download 0.336 N/A N/A a.164.1 C-terminal domain of DFF45/ICAD (DFF-C domain)
View Download 0.333 N/A N/A a.140.1 LEM domain
View Download 0.301 N/A N/A a.144.1 PABC (PABP) domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle