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View Structure Prediction Details

Protein: PRH_ARATH
Organism: Arabidopsis thaliana
Length: 796 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRH_ARATH.

Description E-value Query
Range
Subject
Range
gi|70878483 - gi|70878483|gb|EAN91735.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71649745 - gi|71649745|ref|XP_813586.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
264.0 [0..3] [795..849]

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Predicted Domain #1
Region A:
Residues: [1-171]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEESETKGRI SQETDKACVS VERIGSTLLS SFVKKGKEVS NKRNSKQNKR KAEEELCSKS  60
   61 RTKKYSRGWV RCEEMEEEKV KKTRKRKSKR QQKDNKVEVD DSLRLQRRTR YLLIKMKMQQ 120
  121 NLIDAYATEG WKGQSREKIR PDKELERARK EILNCKLGLR DAIRQLDLLS S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [172-259]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGSMEEKVIA SDGSIHHDHI FCAECNSREA FPDNDIILCD GTCNRAFHQK CLDPPLETES  60
   61 IPPGDQGWFC KFCDCKIEII DTMNAQIG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.39794
Match: 2puyA
Description: No description for 2puyA was found.

Predicted Domain #3
Region A:
Residues: [260-448]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 THFPVDSNWQ DIFNEEASLP IGSEATVNNE ADWPSDDSKD DDYDPEMREN GGGNSSNVSG  60
   61 DGGGDNDEES ISTSLSLSSD GVALSTGSWE GHRLSNMVEQ CETSNEETVC GPRQRRTVDY 120
  121 TQLYYEMFGK DAVLQEQGSE DEDWGPNDRR KRKRESDAGS TLVTMCESSK KDQDVVETLE 180
  181 QSERDSVSV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [449-517]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENKGGRRRMF RLPRNAVEKL RQVFAETELP SKAVRDRLAK ELSLDPEKVN KWFKNTRYMA  60
   61 LRNRKTESV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.0
Match: 2dmsA
Description: No description for 2dmsA was found.

Predicted Domain #5
Region A:
Residues: [518-796]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQPGDSKTVS GGDSGPEAVM ENNTETNEVQ DTLDDTVPPG FDATNQNILS PCNNNQEEFQ  60
   61 QENVSFPSPT DESQQYLEQN DSSFVLVPHE KQSSEISLKT AVEENETESK MMKEPHEELS 120
  121 SEMSLKTAAE EKETESKMIE EPHEELSREM SLKTAVEEKE TESKMMEEPH DELNSEMSLS 180
  181 TAVEEKETGS KMTEESHEEL SNEMSLEEKE TGRKMTEEEE LEAVMEMLCR TENKLLDVTQ 240
  241 RLDRFKTPKG RKKLGNSSSP LLEEDSVVYV PIAEIKEKR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.62
Match: 2i1jA
Description: No description for 2i1jA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle