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View Structure Prediction Details

Protein: PIP28_ARATH
Organism: Arabidopsis thaliana
Length: 278 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PIP28_ARATH.

Description E-value Query
Range
Subject
Range
gi|38198154, gi|... - gi|38198154|emb|CAE53883.1| aquaporin [Ricinus communis], gi|255560555|ref|XP_002521292.1| Aquaporin...
289.0 [0..1] [278..1]

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Predicted Domain #1
Region A:
Residues: [1-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKEVSEEGR HGKDYVDPPP APLLDMAELK LWSFYRAIIA EFIATLLFLY VTVATVIGHK  60
   61 NQTGPCGGVG LLGIAWAFGG MIFVLVYCTA GISGGHINPA VTFGLFLARK VSLPRAVAYM 120
  121 VAQCLGAICG VGLVKAFMMT PYKRLGGGAN TVADGYSTGT ALGAEIIGTF VLVYTVFSAT 180
  181 DPKRSARDSH VPVLAPLPIG FAVFMVHLAT IPITGTGINP ARSFGAAVIY NNEKAWDDHW 240
  241 IFWVGPFVGA LAAAAYHQYI LRAAAIKALA SFRSNPTN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 77.30103
Match: 2b5fA
Description: Crystal structure of the spinach aquaporin SoPIP2;1 in an open conformation to 3.9 resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle