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View Structure Prediction Details

Protein: PHYC_ARATH
Organism: Arabidopsis thaliana
Length: 1111 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for PHYC_ARATH.

Predicted Domain #1
Region A:
Residues: [1-597]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNTSRSCS TRSRQNSRVS SQVLVDAKLH GNFEESERLF DYSASINLNM PSSSCEIPSS  60
   61 AVSTYLQKIQ RGMLIQPFGC LIVVDEKNLK VIAFSENTQE MLGLIPHTVP SMEQREALTI 120
  121 GTDVKSLFLS PGCSALEKAV DFGEISILNP ITLHCRSSSK PFYAILHRIE EGLVIDLEPV 180
  181 SPDEVPVTAA GALRSYKLAA KSISRLQALP SGNMLLLCDA LVKEVSELTG YDRVMVYKFH 240
  241 EDGHGEVIAE CCREDMEPYL GLHYSATDIP QASRFLFMRN KVRMICDCSA VPVKVVQDKS 300
  301 LSQPISLSGS TLRAPHGCHA QYMSNMGSVA SLVMSVTING SDSDEMNRDL QTGRHLWGLV 360
  361 VCHHASPRFV PFPLRYACEF LTQVFGVQIN KEAESAVLLK EKRILQTQSV LCDMLFRNAP 420
  421 IGIVTQSPNI MDLVKCDGAA LYYRDNLWSL GVTPTETQIR DLIDWVLKSH GGNTGFTTES 480
  481 LMESGYPDAS VLGESICGMA AVYISEKDFL FWFRSSTAKQ IKWGGARHDP NDRDGKRMHP 540
  541 RSSFKAFMEI VRWKSVPWDD MEMDAINSLQ LIIKGSLQEE HSKTVVDVPL VDNRVQK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 116.0
Match: 2veaA
Description: No description for 2veaA was found.

Predicted Domain #2
Region A:
Residues: [598-731]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDELCVIVNE MVRLIDTAAV PIFAVDASGV INGWNSKAAE VTGLAVEQAI GKPVSDLVED  60
   61 DSVETVKNML ALALEGSEER GAEIRIRAFG PKRKSSPVEL VVNTCCSRDM TNNVLGVCFI 120
  121 GQDVTGQKTL TENY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.39794
Match: 2gj3A
Description: No description for 2gj3A was found.

Predicted Domain #3
Region A:
Residues: [732-861]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRVKGDYARI MWSPSTLIPP IFITNENGVC SEWNNAMQKL SGIKREEVVN KILLGEVFTT  60
   61 DDYGCCLKDH DTLTKLRIGF NAVISGQKNI EKLLFGFYHR DGSFIEALLS ANKRTDIEGK 120
  121 VTGVLCFLQV 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.09691
Match: 1dp6A
Description: Histidine kinase FixL heme domain
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [862-1111]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSPELQYALQ VQQISEHAIA CALNKLAYLR HEVKDPEKAI SFLQDLLHSS GLSEDQKRLL  60
   61 RTSVLCREQL AKVISDSDIE GIEEGYVELD CSEFGLQESL EAVVKQVMEL SIERKVQISC 120
  121 DYPQEVSSMR LYGDNLRLQQ ILSETLLSSI RFTPALRGLC VSFKVIARIE AIGKRMKRVE 180
  181 LEFRIIHPAP GLPEDLVREM FQPLRKGTSR EGLGLHITQK LVKLMERGTL RYLRESEMSA 240
  241 FVILTEFPLI 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.30103
Match: 2c2aA
Description: Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle