YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PEX2_ARATH
Organism: Arabidopsis thaliana
Length: 333 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEX2_ARATH.

Description E-value Query
Range
Subject
Range
gi|21537047 - gi|21537047|gb|AAM61388.1| putative RING finger protein [Arabidopsis thaliana]
246.0 [0..1] [333..1]

Back

Predicted Domain #1
Region A:
Residues: [1-222]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPSTPADDA WIRSYQRLLP ESQSLLASRR SVIPVAISRV NQFDAARLDV EMSAMLKEQL  60
   61 VKVFTLMKPG MLFQYEPELD AFLEFLIWRF SIWVDKPTPG NALMNLRYRD ERGVVAQHLG 120
  121 KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR 180
  181 IEGIYKAASF LNLLSFLYTG RYRNLIEKAL KARLVYRSPH MN

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 60.79588
Match: PF04757.5
Description: No description for PF04757.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [223-333]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSVSFEYMNR QLVWNEFSEM LLLLLPLLNS SAVKNILSPF AKDKSSSTKE DTVTCPICQV  60
   61 DPAIPFIALP CQHRYCYYCI RTRCASAASF RCLRCNEPVV AIQREGVSSG K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.30103
Match: 2cklB
Description: No description for 2cklB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle