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View Structure Prediction Details

Protein: OXA1_ARATH
Organism: Arabidopsis thaliana
Length: 429 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OXA1_ARATH.

Description E-value Query
Range
Subject
Range
gi|116218725, gi... - gi|254226943|ref|ZP_04920509.1| inner membrane protein, 60 kDa [Vibrio cholerae V51], gi|225354408|r...
364.0 [0..2] [353..139]

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Predicted Domain #1
Region A:
Residues: [1-132]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFRQTLSIR SRLFARRNQP VYHIIPRESD HERDSFCQET SQRSYHSFLH QRSVNNSDFS  60
   61 KVSGGSLHLP LAPTSGFAFY RYMSSAPGVG SEKIGVMSDI AEVITDSTLQ DVPAQAAAAV 120
  121 SEVTLAAADS FF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [133-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIAALQQCID MVHTFTGFEW WASIVVATIL IRSSTVPLLI KQMKDTTKLA LMRPRLESIR  60
   61 EEMQNKGMDS VTMAEGQKKM KNLFKEYGVT PFTPMKGMFI QGPLFICFFL AIRNMAEKVP 120
  121 SFQTGGALWF TDLTTPDSLY ILPVITGLTF LITVECNAQE GMEGNPMAGT VKTVCRVFAL 180
  181 LTVPMTMSFP QAIFCYWITS NLFSLMYGLV IKRPQVKKML RIPDLP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 12.744727
Match: PF02096.11
Description: No description for PF02096.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [359-429]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPPPGQQPSF DLFSALKKMK AMTQDHTQNQ IEPPSPVNPR LSSTSLSPVS KRLKALESQV  60
   61 KGRKKNSSKK K

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle