YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: OLEO2_ARATH
Organism: Arabidopsis thaliana
Length: 199 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OLEO2_ARATH.

Description E-value Query
Range
Subject
Range
gi|2129658, gi|1... - pir||S71253 oleosin, 21K - Arabidopsis thaliana, gi|1107497|emb|CAA63022.1| oleosin type2 [Arabidops...
225.0 [0..1] [199..1]

Back

Predicted Domain #1
Region A:
Residues: [1-92]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADTHRVDRT DRHFQFQSPY EGGRGQGQYE GDRGYGGGGY KSMMPESGPS STQVLSLLIG  60
   61 VPVVGSLLAL AGLLLAGSVI GLMVALPLFL LF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [93-199]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPVIVPAALT IGLAMTGFLA SGMFGLTGLS SISWVMNYLR GTRRTVPEQL EYAKRRMADA  60
   61 VGYAGQKGKE MGQHVQNKAQ DVKQYDISKP HDTTTKGHET QGRTTAA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.988
Match: 1oedA
Description: Acetylcholine receptor protein, alpha chain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle