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View Structure Prediction Details

Protein: NAS2_ARATH
Organism: Arabidopsis thaliana
Length: 320 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NAS2_ARATH.

Description E-value Query
Range
Subject
Range
gi|4220614 - gi|4220614|dbj|BAA74590.1| nicotianamine synathase [Arabidopsis thaliana]
278.0 [0..1] [320..1]

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Predicted Domain #1
Region A:
Residues: [1-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACENNLVVK QIMDLYNQIS NLESLKPSKN VDTLFRQLVS TCLPTDTNID VTEIHDEKVK  60
   61 DMRSHLIKLC GEAEGYLEQH FSAILGSFED NPLNHLHIFP YYNNYLKLGK LEFDLLSQHT 120
  121 THVPTKVAFI GSGPMPLTSI VLAKFHLPNT TFHNFDIDSH ANTLASNLVS RDSDLSKRMI 180
  181 FHTTDVLNAK EGLDQYDVVF LAALVGMDKE SKVKAIEHLE KHMAPGAVVM LRSAHGLRAF 240
  241 LYPIV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.69897
Match: 1uwvA
Description: Crystal Structure of RumA, the iron-sulfur cluster containing E. coli 23S Ribosomal RNA 5-Methyluridine Methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.723277178398499 bayes_pls_golite062009
transferase activity 0.64512166557639 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.54403439349476 bayes_pls_golite062009
methyltransferase activity 0.54389223881989 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [246-320]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSCDLKGFEV LTIYHPSDDV VNSVVIARKL GGSNGARGSQ IGRCVVMPCN CSKVHAILNN  60
   61 RGMEKNLIEE YSAIE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.69897
Match: 2avnA
Description: Crystal structure of Ubiquinone/menaquinone biosynthesis methyltransferase-related protein (tm1389) from THERMOTOGA MARITIMA at 2.35 A resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle