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View Structure Prediction Details

Protein: LTI78_ARATH
Organism: Arabidopsis thaliana
Length: 710 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LTI78_ARATH.

Description E-value Query
Range
Subject
Range
gi|70878483 - gi|70878483|gb|EAN91735.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71649745 - gi|71649745|ref|XP_813586.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
347.0 [0..2] [708..913]

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Predicted Domain #1
Region A:
Residues: [1-183]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQTEEPPLN THQQHPEEVE HHENGATKMF RKVKARAKKF KNSLTKHGQS NEHEQDHDLV  60
   61 EEDDDDDELE PEVIDAPGVT GKPRETNVPA SEEIIPPGTK VFPVVSSDYT KPTESVPVQE 120
  121 ASYGHDAPAH SVRTTFTSDK EEKRDVPIHH PLSELSDREE SRETHHESLN TPVSLLSGTE 180
  181 DVT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [184-351]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STFAPSGDDE YLDGQRKVNV ETPITLEEES AVSDYLSGVS NYQSKVTDPT KEETGGVPEI  60
   61 AESFGNMEVT DESPDQKPGQ FERDLSTRSK EFKEFDQDFD SVLGKDSPAK FPGESGVVFP 120
  121 VGFGDESGAE LEKDFPTRSH DFDMKTETGM DTNSPSRSHE FDLKTESG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [352-569]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDKNSPMGFG SESGAELEKE FDQKNDSGRN EYSPESDGGL GAPLGGNFPV RSHELDLKNE  60
   61 SDIDKDVPTG FDGEPDFLAK GRPGYGEASE EDKFPARSDD VEVETELGRD PKTETLDQFS 120
  121 PELSHPKERD EFKESRDDFE ETRDEKTEEP KQSTYTEKFA SMLGYSGEIP VGDQTQVAGT 180
  181 VDEKLTPVNE KDQETESAVT TKLPISGGGS GVEEQRGE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [570-710]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKSVSGRDYV AEKLTTEEED KAFSDMVAEK LQIGGEEEKK ETTTKEVEKI STEKAASEEG  60
   61 EAVEEEVKGG GGMVGRIKGW FGGGATDEVK PESPHSVEEA PKSSGWFGGG ATEEVKPKSP 120
  121 HSVEESPQSL GSTVVPVQKE L

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle