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View Structure Prediction Details

Protein: LBD6_ARATH
Organism: Arabidopsis thaliana
Length: 199 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LBD6_ARATH.

Description E-value Query
Range
Subject
Range
LBD28_ARATH - LOB domain-containing protein 28 OS=Arabidopsis thaliana GN=LBD28 PE=2 SV=1
213.0 [0..7] [195..10]

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Predicted Domain #1
Region A:
Residues: [1-117]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSTNSPC AACKFLRRKC QPECVFAPYF PPDQPQKFAN VHKVFGASNV TKLLNELHPS  60
   61 QREDAVNSLA YEADMRLRDP VYGCVGVISL LQHQLRQLQI DLSCAKSELS KYQSLGI

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 71.619789
Match: PF03195.5
Description: No description for PF03195.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [118-199]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAATHQSLGI NLLAGAADGT ATAVRDHYHH HQFFPREQMF GGLDVPAGNN YDGGILAIGQ  60
   61 ITQFQQPRAA AGDDGRRTVD PS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle