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View Structure Prediction Details

Protein: LBD12_ARATH
Organism: Arabidopsis thaliana
Length: 193 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LBD12_ARATH.

Description E-value Query
Range
Subject
Range
gi|21592574 - gi|21592574|gb|AAM64523.1| unknown [Arabidopsis thaliana]
251.0 [0..1] [193..1]

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Predicted Domain #1
Region A:
Residues: [1-116]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ  60
   61 RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ LAVAQAEILC IQMQNE

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 71.39794
Match: PF03195.5
Description: No description for PF03195.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [117-193]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTLQSHHQVL ELDQDHKALL LNNNNINNCN TNNNNNNFGY AMSSGQFNSN FASPSSIMQM  60
   61 QMQMQMQDPL KQESLWT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle