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View Structure Prediction Details

Protein: EIF3A_ARATH
Organism: Arabidopsis thaliana
Length: 987 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for EIF3A_ARATH.

Predicted Domain #1
Region A:
Residues: [1-122]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANFAKPENA LKRADELINV GQKQDALQAL HDLITSKRYR AWQKPLEKIM FKYLDLCVDL  60
   61 KRGRFAKDGL IQYRIVCQQV NVSSLEEVIK HFLHLATDKA EQARSQADAL EEALDVDDLE 120
  121 AD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [123-337]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKPEDLQLSI VSGEKGKDRS DRELVTPWFK FLWETYRTVL EILRNNSKLE ALYAMTAHKA  60
   61 FQFCKQYKRT TEFRRLCEII RNHLANLNKY RDQRDRPDLS APESLQLYLD TRFDQLKVAT 120
  121 ELGLWQEAFR SVEDIYGLMC MVKKTPKSSL LMVYYSKLTE IFWISSSHLY HAYAWFKLFS 180
  181 LQKNFNKNLS QKDLQLIASS VVLAALSIPP FDRAQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [338-424]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SASHMELENE KERNLRMANL IGFNLEPKFE GKDMLSRSAL LSELVSKGVL SCASQEVKDL  60
   61 FHVLEHEFHP LDLGSKIQPL LEKISKS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [425-817]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGKLSSAPSL PEVQLSQYVP SLEKLATLRL LQQVSKIYQT IRIESLSQLV PFFQFSEVEK  60
   61 ISVDAVKNNF VAMKVDHMKG VVIFGNLGIE SDGLRDHLAV FAESLSKVRA MLYPVPSKAS 120
  121 KLAGVIPNLA DTVEKEHKRL LARKSIIEKR KEDQERQQLE MEREEEQKRL KLQKLTEEAE 180
  181 QKRLAAELAE RRKQRILREI EEKELEEAQA LLEETEKRMK KGKKKPLLDG EKVTKQSVKE 240
  241 RALTEQLKER QEMEKKLQKL AKTMDYLERA KREEAAPLIE AAYQRRLVEE REFYEREQQR 300
  301 EVELSKERHE SDLKEKNRLS RMLGNKEIFQ AQVISRRQAE FDRIRTEREE RISKIIREKK 360
  361 QERDIKRKQI YYLKIEEERI RKLQEEEEAR KQE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.69897
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [818-987]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAERLKKVEA ERKANLDKAF EKQRQREIEL EEKSRREREE LLRGTNAPPA RLAEPTVTPV  60
   61 GTTAPAAAAA AAGAPAAPYV PKWKRQTTEV SGPSAPTSSE TDRRSNRGPP PGDDHWGSNR 120
  121 GAAQNTDRWT SNRERSGPPA EGGDRWGSGP RGSDDRRSTF GSSRPRPTQR 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.69897
Match: 1c1gA
Description: Tropomyosin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle