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View Structure Prediction Details

Protein: EIF3H_ARATH
Organism: Arabidopsis thaliana
Length: 337 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EIF3H_ARATH.

Description E-value Query
Range
Subject
Range
gi|218194711 - gi|218194711|gb|EEC77138.1| hypothetical protein OsI_15576 [Oryza sativa Indica Group]
gi|50923675, gi|... - gi|50923675|ref|XP_472198.1| OSJNBb0006N15.13 [Oryza sativa (japonica cultivar-group)], gi|38346118|...
300.0 [0..11] [337..21]

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Predicted Domain #1
Region A:
Residues: [1-221]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATMARSFLQ AISKDEAVAP PLRVVQIEGL AVLKIIKHCK EFSPTLVTGQ LLGLDVGSVL  60
   61 EVTNCFPFPV RDDDEEIEAD GANYQLEMMR CLREVNVDNN TVGWYQSTVL GSYQTVELIE 120
  121 TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRGGNFTGE KLREKNFSWM 180
  181 DIFEEIPIKV SNSALVSAFM TELETDTPVS QGDYDRLHSS T

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.39794
Match: 2o95A
Description: No description for 2o95A was found.

Predicted Domain #2
Region A:
Residues: [222-337]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPFLENNMEF LIKCMDDLSM EQQKFQYYYR NLSRQQAQQQ AWLQKRRTEN MARKSAGEEP  60
   61 LPEEDPSNPI FKAIPEPSRL ESFLITNQVS NFCGQINGVA GQNFSRLYLT KALHDN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.865 N/A N/A a.47.2 t-snare proteins
View Download 0.744 N/A N/A a.7.2 Enzyme IIa from lactose specific PTS, IIa-lac
View Download 0.600 N/A N/A a.47.2 t-snare proteins
View Download 0.574 N/A N/A a.47.1 STAT
View Download 0.479 N/A N/A a.7.1 Spectrin repeat


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle