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View Structure Prediction Details

Protein: HAL3B_ARATH
Organism: Arabidopsis thaliana
Length: 201 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HAL3B_ARATH.

Description E-value Query
Range
Subject
Range
HAL3A_ARATH - Phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3A PE=1 SV=1
228.0 [0..2] [201..10]

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Predicted Domain #1
Region A:
Residues: [1-201]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMEVDTVTR KPRILLAASG SVASIKFSNL CHCFSEWAEV KAVASKSSLN FVDKPSLPQN  60
   61 VTLYTDEDEW SSWNKIGDPV LHIELRRWAD VMIIAPLSAN TLAKIAGGLC DNLLTCIVRA 120
  121 WDYSKPLFVA PAMNTLMWNN PFTERHLVLL DELGITLIPP IKKKLACGDY GNGAMAEPSL 180
  181 IYSTVRLFWE SQARKQRDGT S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.09691
Match: 1e20A
Description: 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
phosphopantothenoylcysteine decarboxylase activity 3.86093811191169 bayes_pls_golite062009
phosphopantothenate--cysteine ligase activity 2.64345867885176 bayes_pls_golite062009
carboxy-lyase activity 1.79168084682693 bayes_pls_golite062009
catalytic activity 1.51672397362026 bayes_pls_golite062009
carbon-carbon lyase activity 1.03827559540394 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle