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View Structure Prediction Details

Protein: GBF3_ARATH
Organism: Arabidopsis thaliana
Length: 382 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GBF3_ARATH.

Description E-value Query
Range
Subject
Range
gi|600863, gi|12... - gi|600863|gb|AAA90947.1| G-box binding factor, gi|1262922|gb|AAB06611.1| G-box factor 3
225.0 [0..1] [382..1]

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Predicted Domain #1
Region A:
Residues: [1-116]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP  60
   61 PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL PQGQKDPPLT TPGTLL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 28.187087
Match: PF07777.2
Description: No description for PF07777.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [117-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SIDTPTKSTG NTDNGLMKKL KEFDGLAMSL GNGNPENGAD EHKRSRNSSE TDGSTDGSDG  60
   61 NTTGADEPKL KRSREGTPTK DGKQLVQASS FHSVSPSSGD TGVKLIQGSG AILSPGVSAN 120
  121 SNPFMSQSL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.988
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #3
Region A:
Residues: [246-382]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AMVPPETWLQ NERELKRERR KQSNRESARR SRLRKQAETE ELARKVEALT AENMALRSEL  60
   61 NQLNEKSDKL RGANATLLDK LKCSEPEKRV PANMLSRVKN SGAGDKNKNQ GDNDSNSTSK 120
  121 LHQLLDTKPR AKAVAAG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.522879
Match: 2i1jA
Description: No description for 2i1jA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle