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View Structure Prediction Details

Protein: FAD3E_ARATH
Organism: Arabidopsis thaliana
Length: 386 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FAD3E_ARATH.

Description E-value Query
Range
Subject
Range
FAD3C_RICCO - Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1
310.0 [0..19] [384..95]

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Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVAMDQRTN VNGDPGAGDR KKEERFDPSA QPPFKIGDIR AAIPKHCWVK SPLRSMSYVV  60
   61 RDIIAVAALA IAAVYVDSWF LWPLYWAAQG TLFWAIFVLG HDCGHGSFSD IPLLNSVVGH 120
  121 ILHSFI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [127-276]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVPYHGWRIS HRTHHQNHGH VENDESWVPL PERVYKKLPH STRMLRYTVP LPMLAYPLYL  60
   61 CYRSPGKEGS HFNPYSSLFA PSERKLIATS TTCWSIMFVS LIALSFVFGP LAVLKVYGVP 120
  121 YIIFVMWLDA VTYLHHHGHD EKLPWYRGKE 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [277-386]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WSYLRGGLTT IDRDYGIFNN IHHDIGTHVI HHLFPQIPHY HLVDATKAAK HVLGRYYREP  60
   61 KTSGAIPIHL VESLVASIKK DHYVSDTGDI VFYETDPDLY VYASDKSKIN 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.972
Match: 1tygB
Description: Structure of the thiazole synthase/ThiS complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.26200642311221 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle