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View Structure Prediction Details

Protein: EXPB1_ARATH
Organism: Arabidopsis thaliana
Length: 271 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EXPB1_ARATH.

Description E-value Query
Range
Subject
Range
EXPB3_ARATH - Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2
gi|195604892 - gi|195604892|gb|ACG24276.1| beta-expansin 3 precursor [Zea mays]
326.0 [0..1] [271..1]

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Predicted Domain #1
Region A:
Residues: [1-271]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLFPVILPT LCVFLHLLIS GSGSTPPLTH SNQQVAATRW LPATATWYGS AEGDGSSGGA  60
   61 CGYGSLVDVK PFKARVGAVS PILFKGGEGC GACYKVRCLD KTICSKRAVT IIATDQSPSG 120
  121 PSAKAKHTHF DLSGAAFGHM AIPGHNGVIR NRGLLNILYR RTACKYRGKN IAFHVNAGST 180
  181 DYWLSLLIEY EDGEGDIGSM HIRQAGSKEW ISMKHIWGAN WCIVEGPLKG PFSVKLTTLS 240
  241 NNKTLSATDV IPSNWVPKAT YTSRLNFSPV L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 84.39794
Match: 1n10A
Description: PHL P 1 C-terminal domain; Pollen allergen PHL P 1 N-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle