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View Structure Prediction Details

Protein: ERG11_ARATH
Organism: Arabidopsis thaliana
Length: 516 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERG11_ARATH.

Description E-value Query
Range
Subject
Range
gi|11358675, gi|... - gi|3123331|emb|CAA06772.1| squalene epoxidase homologue [Arabidopsis thaliana], pir||T51365 probable...
329.0 [0..3] [516..1]

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Predicted Domain #1
Region A:
Residues: [1-516]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFTNVCLWT LLAFMLTWTV FYVTNRGKKA TQLADAVVEE REDGATDVII VGAGVGGSAL  60
   61 AYALAKDGRR VHVIERDLRE PERIMGEFMQ PGGRLMLSKL GLEDCLEGID AQKATGMTVY 120
  121 KDGKEAVASF PVDNNNFPFD PSARSFHNGR FVQRLRQKAS SLPNVRLEEG TVKSLIEEKG 180
  181 VIKGVTYKNS AGEETTALAP LTVVCDGCYS NLRRSLNDNN AEVLSYQVGF ISKNCQLEEP 240
  241 EKLKLIMSKP SFTMLYQISS TDVRCVFEVL PNNIPSISNG EMATFVKNTI APQVPLKLRK 300
  301 IFLKGIDEGE HIKAMPTKKM TATLSEKKGV ILLGDAFNMR HPAIASGMMV LLSDILILRR 360
  361 LLQPLSNLGN AQKISQVIKS FYDIRKPMSA TVNTLGNAFS QVLVASTDEA KEAMRQGCYD 420
  421 YLSSGGFRTS GMMALLGGMN PRPISLIYHL CAITLSSIGH LLSPFPSPLR IWHSLRLFGL 480
  481 AMKMLVPHLK AEGVSQMLFP VNAAAYSKSY MAATAL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.221849
Match: 2dkhA
Description: No description for 2dkhA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle