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View Structure Prediction Details

Protein: DOF37_ARATH
Organism: Arabidopsis thaliana
Length: 296 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DOF37_ARATH.

Description E-value Query
Range
Subject
Range
gi|145332923, gi... - gi|30695501|ref|NP_850734.1| DAG1 (dof affecting germination 1); DNA binding / transcription factor ...
295.0 [0..13] [296..1]
gi|4996640, gi|1... - gi|4996640|dbj|BAA78572.1| Dof zinc finger protein [Oryza sativa (japonica cultivar-group)], gi|1154...
219.0 [0..1] [296..1]
gi|37051135 - gi|37051135|dbj|BAC81664.1| DNA binding with one finger 7 protein [Pisum sativum]
205.0 [0..1] [284..1]
gi|7489130, gi|3... - pir||T02203 finger protein Dof - common tobacco (fragment), gi|3341468|emb|CAA08755.1| Dof zinc fing...
205.0 [0..1] [292..1]

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Predicted Domain #1
Region A:
Residues: [1-128]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDATKWTQGF QEMINVKPME QMISSTNNNT PQQQPTFIAT NTRPNATASN GGSGGNTNNT  60
   61 ATMETRKARP QEKVNCPRCN STNTKFCYYN NYSLTQPRYF CKGCRRYWTE GGSLRNVPVG 120
  121 GSSRKNKR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.13
Match: 1i3qI
Description: RBP9 subunit of RNA polymerase II
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [129-296]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSTPLASPSN PKLPDLNPPI LFSSQIPNKS NKDLNLLSFP VMQDHHHHAL ELLRSNGVSS  60
   61 RGMNTFLPGQ MMDSNSVLYS SLGFPTMPDY KQSNNNLSFS IDHHQGIGHN TINSNQRAQD 120
  121 NNDDMNGASR VLFPFSDMKE LSSTTQEKSH GNNTYWNGMF SNTGGSSW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle