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View Structure Prediction Details

Protein: COPT1_ARATH
Organism: Arabidopsis thaliana
Length: 170 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COPT1_ARATH.

Description E-value Query
Range
Subject
Range
gi|18495753 - gi|18495753|emb|CAC87574.1| surface protein [Theileria annulata]
150.0 [0..4] [168..136]

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Predicted Domain #1
Region A:
Residues: [1-170]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHDHMHGMP RPSSSSSSSP SSMMNNGSMN EGGGHHHMKM MMHMTFFWGK NTEVLFSGWP  60
   61 GTSSGMYALC LIFVFFLAVL TEWLAHSSLL RGSTGDSANR AAGLIQTAVY TLRIGLAYLV 120
  121 MLAVMSFNAG VFLVALAGHA VGFMLFGSQT FRNTSDDRKT NYVPPSGCAC 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 45.30103
Match: PF04145.6
Description: No description for PF04145.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle