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View Structure Prediction Details

Protein: CKX2_ARATH
Organism: Arabidopsis thaliana
Length: 501 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CKX2_ARATH.

Description E-value Query
Range
Subject
Range
gi|113869045, gi... - gi|113869045|ref|YP_727534.1| D-lactate dehydrogenase (cytochrome) [Ralstonia eutropha H16], gi|1135...
366.0 [0..9] [501..5]

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Predicted Domain #1
Region A:
Residues: [1-501]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLRLMITL ITVLMITKSS NGIKIDLPKS LNLTLSTDPS IISAASHDFG NITTVTPGGV  60
   61 ICPSSTADIS RLLQYAANGK STFQVAARGQ GHSLNGQASV SGGVIVNMTC ITDVVVSKDK 120
  121 KYADVAAGTL WVDVLKKTAE KGVSPVSWTD YLHITVGGTL SNGGIGGQVF RNGPLVSNVL 180
  181 ELDVITGKGE MLTCSRQLNP ELFYGVLGGL GQFGIITRAR IVLDHAPKRA KWFRMLYSDF 240
  241 TTFTKDQERL ISMANDIGVD YLEGQIFLSN GVVDTSFFPP SDQSKVADLV KQHGIIYVLE 300
  301 VAKYYDDPNL PIISKVIDTL TKTLSYLPGF ISMHDVAYFD FLNRVHVEEN KLRSLGLWEL 360
  361 PHPWLNLYVP KSRILDFHNG VVKDILLKQK SASGLALLYP TNRNKWDNRM SAMIPEIDED 420
  421 VIYIIGLLQS ATPKDLPEVE SVNEKIIRFC KDSGIKIKQY LMHYTSKEDW IEHFGSKWDD 480
  481 FSKRKDLFDP KKLLSPGQDI F

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.0
Match: 1w1oA
Description: Native Cytokinin Dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.310870522438846 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle