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View Structure Prediction Details

Protein: CHMO_ARATH
Organism: Arabidopsis thaliana
Length: 422 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHMO_ARATH.

Description E-value Query
Range
Subject
Range
gi|23978945 - gi|23978945|dbj|BAC21260.1| choline monooxygenase [Arabidopsis thaliana]
355.0 [0..1] [422..1]

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Predicted Domain #1
Region A:
Residues: [1-422]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTTLTATVP EFLPPSLKST RGYFNSHSEF GVSISKFSRR RFHNPTRVFA VSDISKLVTE  60
   61 FDPKIPLERA STPPSSWYTD PQFYSFELDR VFYGGWQAVG YSDQIKESRD FFTGRLGDVD 120
  121 FVVCRDENGK IHAFHNVCSH HASILASGNG RKSCFVCLYH GWTYSLSGSL VKATRMSGIQ 180
  181 NFSLSEMGLK PLRVAVWGPF VLLKVTAATS RKGEVETDEL VASEWLGTSV GRLSQGGVDS 240
  241 PLSYICRREY TIDCNWKVFC DNYLDGGYHV PYAHKGLMSG LDLETYSTTI FEKVSIQECG 300
  301 GGSKVGEDGF DRLGSEALYA FVYPNFMINR YGPWMDTNLV LPLGPRKCKV VFDYFLDPSL 360
  361 KDDEAFIKRS LEESDRVQME DVMLCESVQR GLESQAYDKG RYALVEKPMH HFHCLLHHNL 420
  421 KL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 66.39794
Match: 1uliA
Description: Biphenyl dioxygenase (BphA1A2) derived from Rhodococcus sp. strain RHA1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.21668272655872 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle