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View Structure Prediction Details

Protein: PTR7_ARATH
Organism: Arabidopsis thaliana
Length: 590 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTR7_ARATH.

Description E-value Query
Range
Subject
Range
PTR1_ARATH - Protein NRT1/ PTR FAMILY 8.1 OS=Arabidopsis thaliana GN=NPF8.1 PE=1 SV=1
387.0 [0..5] [570..2]

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Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT  60
   61 GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL TIAIFAAIQA TGVSILTLS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.69897
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [120-590]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TIIPGLRPPR CNPTTSSHCE QASGIQLTVL YLALYLTALG TGGVKASVSG FGSDQFDETE  60
   61 PKERSKMTYF FNRFFFCINV GSLLAVTVLV YVQDDVGRKW GYGICAFAIV LALSVFLAGT 120
  121 NRYRFKKLIG SPMTQVAAVI VAAWRNRKLE LPADPSYLYD VDDIIAAEGS MKGKQKLPHT 180
  181 EQFRSLDKAA IRDQEAGVTS NVFNKWTLST LTDVEEVKQI VRMLPIWATC ILFWTVHAQL 240
  241 TTLSVAQSET LDRSIGSFEI PPASMAVFYV GGLLLTTAVY DRVAIRLCKK LFNYPHGLRP 300
  301 LQRIGLGLFF GSMAMAVAAL VELKRLRTAH AHGPTVKTLP LGFYLLIPQY LIVGIGEALI 360
  361 YTGQLDFFLR ECPKGMKGMS TGLLLSTLAL GFFFSSVLVT IVEKFTGKAH PWIADDLNKG 420
  421 RLYNFYWLVA VLVALNFLIF LVFSKWYVYK EKRLAEVGIE LDDEPSIPMG H

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.522879
Match: 1xmeA
Description: Structure of Recombinant Cytochrome ba3 Oxidase from Thermus thermophilus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transporter activity 4.2806100513341 bayes_pls_golite062009
transmembrane transporter activity 4.19885907933483 bayes_pls_golite062009
substrate-specific transporter activity 3.84408202866254 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 3.8040203610363 bayes_pls_golite062009
ion transmembrane transporter activity 3.75138450662165 bayes_pls_golite062009
cation transmembrane transporter activity 3.70789105655322 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 3.50677244808268 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 3.31056542061812 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 3.23490160064241 bayes_pls_golite062009
heme-copper terminal oxidase activity 2.43885551987643 bayes_pls_golite062009
cytochrome-c oxidase activity 2.04232192418952 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor 2.04232192418952 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors 2.04232192418952 bayes_pls_golite062009
catalytic activity 1.95966890211023 bayes_pls_golite062009
hydrolase activity 1.80020668269789 bayes_pls_golite062009
binding 0.632960821340123 bayes_pls_golite062009
active transmembrane transporter activity 0.349031670056176 bayes_pls_golite062009
oxidoreductase activity 0.243994367285022 bayes_pls_golite062009
primary active transmembrane transporter activity 0.114666275609784 bayes_pls_golite062009
protein binding 0.0161625430256639 bayes_pls_golite062009

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