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View Structure Prediction Details

Protein: CCB11_ARATH
Organism: Arabidopsis thaliana
Length: 428 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCB11_ARATH.

Description E-value Query
Range
Subject
Range
gi|166684, gi|908816 - gi|908816|emb|CAA44169.1| cyclin [Arabidopsis thaliana], gi|166684|gb|AAA32781.1| cyclin
410.0 [0..1] [428..1]

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Predicted Domain #1
Region A:
Residues: [1-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTSRSIVPQ QSTDDVVVVD GKNVAKGRNR QVLGDIGNVV RGNYPKNNEP EKINHRPRTR  60
   61 SQNPTLLVED NLKKPVVKRN AVPKPKKVAG KPKVVDVIEI SSDSDEELGL VAAREKKATK 120
  121 KKATTYTSVL TARSKAACGL EKKQKEKIVD IDS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [154-428]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADVENDLAAV EYVEDIYSFY KSVESEWRPR DYMASQPDIN EKMRLILVEW LIDVHVRFEL  60
   61 NPETFYLTVN ILDRFLSVKP VPRKELQLVG LSALLMSAKY EEIWPPQVED LVDIADHAYS 120
  121 HKQILVMEKT ILSTLEWYLT VPTHYVFLAR FIKASIADEK MENMVHYLAE LGVMHYDTMI 180
  181 MFSPSMVAAS AIYAARSSLR QVPIWTSTLK HHTGYSETQL MDCAKLLAYQ QWKQQEEGSE 240
  241 SSTKGALRKK YSKDERFAVA LIPPAKALLT GTESA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.69897
Match: 2jgzB
Description: No description for 2jgzB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle