| Protein: | CNG16_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 705 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CNG16_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
349.0 | [0..6] | [704..64] |
|
|
339.0 | [0..2] | [604..360] |
|
|
339.0 | [0..2] | [604..363] |
|
|
338.0 | [0..2] | [604..363] |
|
Region A: Residues: [1-168] |
1 11 21 31 41 51
| | | | | |
1 MSNLHLYTSA RFRNFPTTFS LRHHHNDPNN QRRRSIFSKL RDKTLDPGGD LITRWNHIFL 60
61 ITCLLALFLD PLYFYLPIVQ AGTACMSIDV RFGIFVTCFR NLADLSFLIH ILLKFKTAFV 120
121 SKSSRVFGRG ELVMDRREIA IRYLKSEFVI DLAATLPLPQ IMIWFVIP
|
| Detection Method: |  |
| Confidence: | 0.95 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [169-441] |
1 11 21 31 41 51
| | | | | |
1 NAGEFRYAAH QNHTLSLIVL IQYVPRFLVM LPLNRRIIKA TGVAAKTAWS GAAYNLILYL 60
61 LVSHVLGSVW YVLSIQRQHE CWRRECIKEM NATHSPSCSL LFLDCGSLHD PGRQAWMRIT 120
121 RVLSNCDARN DDDQHFQFGM FGDAFTNDVT SSPFFDKYFY CLWWGLRNLS SYGQSLAAST 180
181 LSSETIFSCF ICVAGLVFFS HLIGNVQNYL QSTTARLDEW RVRRRDTEEW MRHRQLPDEL 240
241 QERVRRFVQY KWLTTRGVDE EAILRALPLD LRR
|
| Detection Method: | |
| Confidence: | 16.69897 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [442-599] |
1 11 21 31 41 51
| | | | | |
1 QIQRHLCLAL VRRVPFFAQM DDQLLDAICE RLVPSLNTKD TYVIREGDPV NEMLFIIRGQ 60
61 MESSTTDGGR SGFFNSITLR PGDFCGEELL TWALVPNINH NLPLSTRTVR TLSEVEAFAL 120
121 RAEDLKFVAN QFRRLHSKKL QHAFRYYSHQ WRAWGTCF
|
| Detection Method: | |
| Confidence: | 16.522879 |
| Match: | 1wgpA |
| Description: | Solution structure of the cNMP-binding domain from Arabidopsis thaliana cyclic nucleotide-regulated ion channel |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [600-705] |
1 11 21 31 41 51
| | | | | |
1 IQAAWRRYMK RKLAMELARQ EEEDDYFYDD DGDYQFEEDM PESNNNNGDE NSSNNQNLSA 60
61 TILASKFAAN TKRGVLGNQR GSTRIDPDHP TLKMPKMFKP EDPGFF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.557 | a.24.3 | Cytochromes |
| View | Download | 0.549 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.517 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.511 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.458 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.449 | a.24.3 | Cytochromes |
| View | Download | 0.409 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.338 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.316 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.261 | a.7.8 | GAT domain |
| View | Download | 0.258 | a.7.8 | GAT domain |
| View | Download | 0.201 | a.7.8 | GAT domain |
