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View Structure Prediction Details

Protein: CB4C_ARATH
Organism: Arabidopsis thaliana
Length: 276 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CB4C_ARATH.

Description E-value Query
Range
Subject
Range
gi|3036955 - gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris]
266.0 [0..1] [275..1]

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Predicted Domain #1
Region A:
Residues: [1-276]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTTAAAAS GIFGIRIQDP RPGTGRVQAR FGFSFGKKKP APPPKKSRQV QDDGDRLVWF  60
   61 PGANPPEWLD GSMIGDRGFD PFGLGKPAEY LQYDFDGLDQ NLAKNVAGDI IGIIQESSEI 120
  121 KPTPFQPYTE VFGIQRFREC ELIHGRWAML GTLGAIAVEA LTGIAWQDAG KVELVEGSSY 180
  181 LGQPLPFSLT TLIWIEVLVV GYIEFQRNSE LDPEKRIYPG GYFDPLGLAA DPEKLDTLKL 240
  241 AEIKHSRLAM VAFLIFALQA AFTGKGPVSF LATFNN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.221849
Match: 1rwtA
Description: Crystal Structure of Spinach Major Light-harvesting complex at 2.72 Angstrom Resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle