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View Structure Prediction Details

Protein: CB4B_ARATH
Organism: Arabidopsis thaliana
Length: 287 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CB4B_ARATH.

Description E-value Query
Range
Subject
Range
gi|4689382 - gi|4689382|gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [Vigna radiata]
294.0 [0..11] [287..12]

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Predicted Domain #1
Region A:
Residues: [1-287]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATSTAAAA SSIMGTRVVS DISSNSSRFT ARFGFGTKKA SPKKAKTVIS DRPLWFPGAK  60
   61 SPEYLDGSLV GDYGFDPFGL GKPAEYLQFD LDSLDQNLAK NLYGEVIGTR TEAVDPKSTP 120
  121 FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVEL VDGSSYLGQP 180
  181 LPFSISTLIW IEVLVIGYIE FQRNAELDSE KRLYPGGKFF DPLGLASDPV KKAQLQLAEI 240
  241 KHARLAMVGF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.69897
Match: 1rwtA
Description: Crystal Structure of Spinach Major Light-harvesting complex at 2.72 Angstrom Resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle