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View Structure Prediction Details

Protein: CB5_ARATH
Organism: Arabidopsis thaliana
Length: 280 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CB5_ARATH.

Description E-value Query
Range
Subject
Range
gi|3036955 - gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris]
313.0 [0..9] [278..1]

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Predicted Domain #1
Region A:
Residues: [1-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLGVSEML GTPLNFRAVS RSSAPLASSP STFKTVALFS KKKPAPAKSK AVSETSDELA  60
   61 KWYGPDRRIF LPDGLLDRSE IPEYLNGEVA GDYGYDPFGL GKKPENFAKY QAFELIHARW 120
  121 AMLGAAGFII PEALNKYGAN CGPEAVWFKT GALLLDGNTL NYFGKNIPIN LVLAVVAEVV 180
  181 LLGGAEYYRI TNGLDFEDKL HPGGPFDPLG LAKDPEQGAL LKVKEIKNGR LAMFAMLGFF 240
  241 IQAYVTGEGP VENLAKHLSD PFGNNLLTVI AGTAERAPTL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 76.0
Match: 1rwtA
Description: Crystal Structure of Spinach Major Light-harvesting complex at 2.72 Angstrom Resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle