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View Structure Prediction Details

Protein: CA4_ARATH
Organism: Arabidopsis thaliana
Length: 251 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CA4_ARATH.

Description E-value Query
Range
Subject
Range
gi|3036955 - gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris]
265.0 [0..1] [251..1]

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Predicted Domain #1
Region A:
Residues: [1-70]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVTTHASA SIFRPCTSKP RFLTGSSGRL NRDLSFTSIG SSAKTSSFKV EAKKGEWLPG  60
   61 LASPDYLTGS 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.17
Match: 1rwtA
Description: Crystal Structure of Spinach Major Light-harvesting complex at 2.72 Angstrom Resolution
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [71-251]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAGDNGFDPL GLAEDPENLK WFVQAELVNG RWAMLGVAGM LLPEVFTKIG IINVPEWYDA  60
   61 GKEQYFASSS TLFVIEFILF HYVEIRRWQD IKNPGSVNQD PIFKQYSLPK GEVGYPGGIF 120
  121 NPLNFAPTQE AKEKELANGR LAMLAFLGFV VQHNVTGKGP FENLLQHLSD PWHNTIVQTF 180
  181 N

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.221849
Match: 2o014
Description: No description for 2o014 was found.

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